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Entrez Direct: E-utilities on the UNIX Command Line

WGCNA: an R package for weighted correlation network analysis

Atom install, packages install. Some awesome packages for atom

An standard way to visualizing GO ontology data by using ggplot

R package for Bioinformatics; made by Doc. Yu

WGCNA in action.

WGCNA Tutorial 2

WGCNA Tutorial 1

R package for statistic graphics, R package, circlize

R library for fasta sequences handling.

Codes for hot to running EdgeR to call differential Expression Genes from RSEM result. (More details you can find in Trinity wiki)