SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation© Della-3
Trimmomatic
fastp

fastp

fastp is a fast and efficient tool for quality control and preprocessing of high-throughput sequencing data. It can perform adapter trimming, quality filtering, and read correction in a single pass, and supports various sequencing platforms and data formats.
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FastQC

FastQC

FastQC is a quality control tool used to analyze high-throughput sequencing data. It provides detailed graphs and reports that help assess the quality of the data before further downstream analysis.
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