fastp is a fast and efficient tool for quality control and preprocessing of high-throughput sequencing data. It can perform adapter trimming, quality filtering, and read correction in a single pass, and supports various sequencing platforms and data formats.

FastQC is a quality control tool used to analyze high-throughput sequencing data. It provides detailed graphs and reports that help assess the quality of the data before further downstream analysis.

IGV, and free reads map visualization

An standard pipeline for miRNA-Seq data processing.

Samtools

Denove Prokaryotic Genome with Spader

SNP Calling: samtools

sratools for manage SRA Files

Entrez Direct: E-utilities on the UNIX Command Line

Calcium competent cells are bacterial cells that are treated with calcium chloride to increase their ability to uptake plasmid DNA. The calcium ions disrupt the cell membrane and make it more permeable to DNA, increasing the efficiency of transformation. These cells are commonly used in molecular biology experiments to introduce foreign DNA into bacterial cells. Who said this?

Atom install, packages install. Some awesome packages for atom

Uniprot api for R