OPTICAL SPECTROSCOPY – THE ABSORPTION PROCESS

Artificial Intelligent

Schrodinger Function

PARTICLE-WAVE DUALITY

Light in Physics

Using Vim as R IDE

Structure of the Immunoglobulin

ImageMagick is a versatile open-source tool for image manipulation, capable of reading and writing over 200 image file formats. Renowned for its flexibility, it allows users to efficiently perform a wide array of image transformations, including resizing, format conversion, and special effects, either programmatically or via command line. Ideal for batch processing and on-the-fly image manipulation, ImageMagick is widely employed in web development, graphic design, and photography.

MGT®, the international ImMunoGeneTics information system®, is a comprehensive resource for immunogenetics and immunoinformatics. It was created and has been developed since 1989 by Professor Marie-Paule Lefranc at the Université de Montpellier, France. IMGT® is recognized as the global reference in immunogenetics and immunoinformatics due to its high-quality, integrated knowledge and its standardized nomenclature.

IgBLAST is a tool commonly used in bioinformatics. IgBLAST (Immunoglobulin BLAST) is designed for the analysis of immunoglobulin (IG) and T cell receptor (TCR) sequences. It's part of the suite of tools offered by the National Center for Biotechnology Information (NCBI).

The cellranger vdj pipeline can be used to analyze sequencing data produced from Chromium Next GEM Single Cell 5' V(D)J libraries. It takes FASTQ files for V(D)J libraries and performs sequence assembly and paired clonotype calling. The pipeline uses the Chromium Cell Barcodes (also called 10x Barcodes) and UMIs to assemble V(D)J transcripts per cell. Clonotypes and CDR3 sequences are output as a .vloupe file which can be loaded into Loupe V(D)J Browser. Visit the What is Cell Ranger page to learn more about Cell Ranger for Immune Profiling. (10X Genomics)

SSH, or Secure Shell, is a cryptographic network protocol for secure and encrypted communication over unsecured networks. It is significant for its ability to provide secure remote access to servers, secure file transfer, and a reliable means of executing remote commands, all while ensuring the confidentiality and integrity of data in transit.

A phylogenetic tree is a branching diagram that shows the evolutionary relationships among different species or entities, based on their physical or genetic characteristics. It illustrates how species have diverged from common ancestors over time. These trees are constructed using morphological or genetic data and are used in biology, epidemiology, and conservation to understand the evolutionary history and relationships of organisms.

CD-HIT was originally a protein clustering program. The main advantage of this program is its ultra-fast speed. It can be hundreds of times faster than other clustering programs, for example, BLASTCLUST. Therefore it can handle very large databases, like NR. The 1st version of this program, CD-HI, was published and released in 2001. The 2nd version, called CD-HIT, was published in 2002 with significant improvements. Since 2004, CD-HIT has been hosted at bioinformatics.org as an open source project. Current CD-HIT package can perform various jobs like clustering a protein database, clustering a DNA/RNA database, comparing two databases (protein or DNA/RNA), generating protein families, and many others.

In summary, extracting information from PDB files and visualizing it with PyVista enables a deep and interactive exploration of biomolecular structures, which is vital for various scientific and medical research purposes. This approach harnesses the power of computational tools to augment our understanding of complex biological systems.