Render Your Protein in Blender with Molecular Nodes

Protein Dock Tools and algorithm Overview

AI Tools for Protein Structures

In summary, extracting information from PDB files and visualizing it with PyVista enables a deep and interactive exploration of biomolecular structures, which is vital for various scientific and medical research purposes. This approach harnesses the power of computational tools to augment our understanding of complex biological systems.

The main idea of this work is to use PyMOL for calculating the surface information/mesh structure, and then employ Python to read that information for visualization and other complex/advanced calculations. In other words, it seamlessly bridges PyMOL and Python.

To create 3D plots in Python, you can use the Matplotlib library. Matplotlib provides a toolkit called mplot3d, which allows you to create 3D plots using functions such as plot_surface, plot_wireframe, and scatter. You can customize the appearance of the plots by setting properties such as color, marker type, and line style.

3D plot resolution for ggplot

rayrender is an awesome 3D model visualizing library. But it takes lot's of calculating as all other similar tools. Prepare for cooling-fan for your laptop before try this