FastQC is a quality control tool used to analyze high-throughput sequencing data. It provides detailed graphs and reports that help assess the quality of the data before further downstream analysis.

IGV, and free reads map visualization

An standard pipeline for miRNA-Seq data processing.

Samtools

Denove Prokaryotic Genome with Spader

SNP Calling: samtools

sratools for manage SRA Files

Entrez Direct: E-utilities on the UNIX Command Line

Atom install, packages install. Some awesome packages for atom

Uniprot api for R