Pathview

Pathview

The best way to draw kegg pathways in all platform!!! It is very friendly and powerful!!
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R base

R base

Functions from R base; for the beginners
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Biostrings

Biostrings

R library for fasta sequences handling.
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Data cleaning
Data normalization

Data normalization

Few ways to normalizing your date, reducing batch effect...
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circlize

circlize

R package for statistic graphics, R package, circlize
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Common Library for R
GGplot in Github

GGplot in Github

So, I collected the ggplot related packages from github, and sorting them by most stars.
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R-riverplot
XGBoost (out of date)
Edger

Edger

Codes for hot to running EdgeR to call differential Expression Genes from RSEM result. (More details you can find in Trinity wiki)
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