With the package sangerseqR, we can easily read and manipulate abi files

Processing Your SNP file with Python:

abi

abi

One of the best resolution to draw trees in R

An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.

An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.

Entrez Direct: E-utilities on the UNIX Command Line

Genome-Wide Profiling of Histone Modification with Chip-Seq (CD Genomics)

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Tophat

transdecoder for translate your mRNA to protein

Trimmomatic is a java tool for cut and filter reads

Trinity RNA-seq is a de novo transcriptome assembly software that uses RNA-seq data to reconstruct transcript sequences and estimate expression levels. It allows for comprehensive analysis of gene expression and isoform diversity in non-model organisms without a reference genome. Who said this?