DNA Seq Pipelines and tricks

This post would show you a pipeline to find the new or abnormal transcript isoforms after de-novo by Trinity

Tricks for dealing with VCF files

Extract texts from img

ggbio, a powerful package to plot all kinds of sequence plot

Build BSgenome by youself in OS environment

python

For sharing some fancy tools for seeped up your work/or study

A 2D Density Plot is a way to display the distribution of data as a 2D heat map. It uses color-coding to represent areas of high and low density in a scatterplot, with darker colors indicating areas of higher density. It is useful for visualizing large datasets and identifying patterns in the data. Who said this?

Detect the edge of the image by using python opencv

Bluetooth is a bit odd. There are a lot of factors that go into whether Bluetooth devices work together as expected.

If you need a fancy but elegant calendar live in your terminal, khal would be an awesome choice.

It would be easy to count the result when we have only a few cells in an image. But once you got thousands of cells in an image and/or you got hundreds of repeats, the work would be tedious and laboring. But with the help of python, we can do more than sample counts and gray intensity calculation. We can apply more complicated techniques like Vironoi spacial calculation and Delaunay triangulation. I'll show how can we apply these two algorithms to finally determine whether cells may share boundaries or be physically contacted.

Make BioStatistics easy with R or Python

Python GAM to fit