String DB© Karobben

String DB

STRING database is a web-based tool that provides information on protein-protein interactions, including physical and functional associations. It consolidates and scores data from multiple sources, making it a valuable resource for functional annotation and network analysis in the life sciences. Who sad this?
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Cellpose

Cellpose is a deep learning-based software that automates cell segmentation and classification from fluorescence microscopy images. It provides a user-friendly interface and can process a large number of images in a short time, making it a valuable tool for biologists and biomedical researchers studying cell morphology and behavior. Who sad this?
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TCGA Database with R

TCGAbiolinks is an R package that provides an easy-to-use interface to access and analyze data from The Cancer Genome Atlas (TCGA) project. It allows users to download TCGA data, perform quality control, differential expression analysis, and data visualization. TCGAbiolinks has contributed to a better understanding of the molecular basis of cancer and identified new potential biomarkers and therapeutic targets. Who sad this?
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flybase api

Learning the API from FlyBase is important for accessing and integrating fly genetic and genomic data. It provides programmatic access to a variety of data, such as gene sequences, expression patterns, and genetic variants, allowing researchers to easily extract and analyze large datasets. This can facilitate the discovery of new insights and hypotheses in biological research. Who sad this?
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Brownian Motion© Karobben

Brownian Motion

Brownian motion is the random and erratic movement of small particles in a fluid or gas due to collisions with molecules in the surrounding medium. It was first observed and explained by Robert Brown in 1827, and is an important concept in the study of diffusion and stochastic processes. Who said this?
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RNA-structure and Prediction© Karobben

RNA-structure and Prediction

RNA structure research is important for understanding RNA function and regulation, as the structure of RNA molecules can impact their interactions with other molecules, such as proteins and small molecules, and influence gene expression and protein synthesis. Who sad this?
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Wet Lab Techs with Brief Explained© Karobben
KEGG API© Karobben

KEGG API

Learning KEGG API is important for accessing and integrating biological pathway data, enabling researchers to analyze and visualize complex biological systems, identify new potential drug targets, and explore the relationships between genes, proteins, and metabolic pathways. Who sad this?
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Venn Plot in R

Venn plot is a visualization tool to display overlapping or unique sets between two or more groups. In R, the 'VennDiagram' package provides an easy-to-use interface to create Venn plots with customizable colors, labels, and shapes. Who sad this?
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FPKM, RPKM, CPM, TPM, TMM in RNA-Seq

RNA-seq expression normalization is the process of adjusting the raw gene expression counts to account for differences in sequencing depth and other technical factors. It is important to perform normalization to enable comparisons between samples and increase the accuracy and reproducibility of downstream analyses. Common normalization methods include TPM, FPKM, and DESeq. Who sad this?
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Gene Set Enrichment Analysis (GESA) in R© Karobben

Gene Set Enrichment Analysis (GESA) in R

Gene Set Enrichment Analysis (GSEA) is a powerful tool for interpreting gene expression data in the context of predefined biological pathways and gene sets. It allows researchers to identify enriched gene sets, discover new relationships between genes, and gain insights into the underlying biological mechanisms. Who sad this?
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Dash-bio, powered by plotly, python© Karobben

Dash-bio, powered by plotly, python

Dash-bio is a library that enables the creation of interactive, dynamic dashboards for exploring and analyzing biological data using Plotly Dash. With its customizable components and support for various data formats, dash-bio is a convenient tool for bioinformatics professionals and researchers Who sad this?
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Regulatory RNA

Regulatory RNA refers to non-coding RNA molecules that play a role in regulating gene expression. These molecules can control gene expression by interacting with DNA and/or mRNA, influencing the process of transcription and translation. Examples of regulatory RNA include microRNAs, siRNAs, and long non-coding RNAs. Who sad this?
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Short reads aligner compartment

The choice of software for aligning short reads in NGS can have a significant impact on the results. Different software programs use different algorithms for aligning reads and handling mismatches, leading to different levels of accuracy and sensitivity. Some software may prioritize speed, while others may prioritize accuracy, and still others may have specific strengths or limitations in handling certain types of data. It's important to carefully consider the characteristics and limitations of each software before making a choice to ensure the best possible alignment results Who sad this?
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