HDF5 Data Format Introduction© Karobben

HDF5 Data Format Introduction

HDF5 (Hierarchical Data Format version 5) is a file format designed for efficiently storing and organizing large, complex datasets. It uses a hierarchical structure of **groups** (like directories) and **datasets** (like files) to store data, supporting multidimensional arrays, metadata, and a wide variety of data types. Key advantages include **compression**, **cross-platform compatibility**, and the ability to handle large datasets that don’t fit in memory. It’s widely used in fields like scientific computing, machine learning, and bioinformatics due to its efficiency and flexibility.
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Evaluating the quality of classification© Dell-3
Navigating the Challenges of Sparse Datasets in Machine Learning© Dell-3

Navigating the Challenges of Sparse Datasets in Machine Learning

Navigating the world of sparse datasets is a fundamental skill in machine learning. This blog post delves into the challenges posed by sparse datasets, such as high dimensionality, overfitting, and computational inefficiency, offering insightful strategies to overcome them. With hands-on Python code snippets for visualization and implementation of solutions like dimensionality reduction, imputation, and regularization, this post is a comprehensive guide for anyone looking to harness the potential of sparse data in building robust machine learning models. Explore the intricacies of dealing with sparse datasets and equip yourself with the knowledge to turn challenges into opportunities!
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RNN, Recurrent Neural Network

A Recurrent Neural Network (RNN) is a class of artificial neural network that has memory or feedback loops that allow it to better recognize patterns in data. RNNs are an extension of regular artificial neural networks that add connections feeding the hidden layers of the neural network back into themselves - these are called recurrent connections. The recurrent connections provide a recurrent network with visibility of not just the current data sample it has been provided, but also it's previous hidden state. A recurrent network with a feedback loop can be visualized as multiple copies of a neural network, with the output of one serving as an input to the next. Unlike traditional neural networks, recurrent nets use their understanding of past events to process the input vector rather than starting from scratch every time. (© 2023 NVIDIA Corporation)
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Overlap calculation in R© Karobben

Overlap calculation in R

There are several R packages that can help you calculate the overlap between two density distributions. For example, `overlap`, `kerndwd`, `KernSmooth`, and `pracma`
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Brownian Motion© Karobben

Brownian Motion

Brownian motion is the random and erratic movement of small particles in a fluid or gas due to collisions with molecules in the surrounding medium. It was first observed and explained by Robert Brown in 1827, and is an important concept in the study of diffusion and stochastic processes. Who said this?
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Python: Cell masks result analysis© Karobben

Python: Cell masks result analysis

It would be easy to count the result when we have only a few cells in an image. But once you got thousands of cells in an image and/or you got hundreds of repeats, the work would be tedious and laboring. But with the help of python, we can do more than sample counts and gray intensity calculation. We can apply more complicated techniques like Vironoi spacial calculation and Delaunay triangulation. I'll show how can we apply these two algorithms to finally determine whether cells may share boundaries or be physically contacted.
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Python: Find the outline (edge) of the 2D points© Karobben

Python for Data Science

Data science is a field that combines statistical and computational techniques to extract insights and knowledge from data. It involves collecting, cleaning, analyzing, and interpreting large and complex data sets using tools such as machine learning, data mining, and visualization. The goal is to make data-driven decisions and predictions. Who said this?
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Sanger Sequencing (abi) Plot (Biopython)
Python Machine Learning

Python Machine Learning

Machine Learning is a subset of artificial intelligence that involves training algorithms to make predictions or decisions based on data. It involves learning from patterns and trends in data and using that knowledge to make predictions or decisions without being explicitly programmed. It is used in various fields like finance, healthcare, and marketing. Who said this?
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