To create a fasta file from a VCF file, use a script or software that can extract the genomic sequence information from the VCF file and format it into the fasta format. This allows you to generate a sequence-based representation of the genetic variation data stored in the VCF file, making it easier to visualize, analyze, and compare the variants. The fasta file can then be used as input for various bioinformatics tools and pipelines. Who sad this?

Genome annotations help us understand the functions and roles of genes and genomic regions, leading to improved knowledge of biological processes and disease mechanisms. Who sad this?

Chip-Seq, Know to Unknown = =

Unmapped reads Annotations

DNA Seq Pipelines and tricks

This post would show you a pipeline to find the new or abnormal transcript isoforms after de-novo by Trinity

Tricks for dealing with VCF files

ggbio, a powerful package to plot all kinds of sequence plot

Basic knowledge and concepts for Artificial Neural Network

Single Cell RNA-Seq Notes from Seminal

Bioinformatics: scRNA-seq data processing practices, protocol from seurat

Classes 1, Fundamental Concept

RNA-Seq annotation, GO, KEGG

用biopython抽取特定長度的序列

With the package sangerseqR, we can easily read and manipulate abi files